Exploring the bacterial genetic diversity and community structure of crude oil contaminated soils using microbiomics.

The impact of environmental pollution in air and water is reflected mainly in the soil ecosystem as it impairs soil functions. Also, since the soil is the habitat for billions of organisms, the biodiversity is in turn altered. Microbes are precise sensors of ecological contamination, and bacteria have a key and important function in terms of bioremediation of the contaminated soil. Hence in the current work, we aimed at assessing the unidentified bacterial population through Illumina MiSeq sequencing technology and their community structural changes in different levels of petroleum-contaminated soil and sludge samples (aged, sludge, and leakage soil) to identify unique bacteria for their potential application in remediation. The studies showed that major bacterial consortiums namely, Proteobacteria (57%), Alphaproteobacteria (31%), and Moraxellaceae (23%) were present in aged soil, whereas Proteobacteria (52%), Alphaproteobacteria (33%), and Rhodobacteraceae (28%) were dominantly found in sludge soil. In leakage soil, Proteobacteria (59%), Alphaproteobacteria (33%), and Rhodobacteraceae (29%) were abundantly present. The Venn diagrams are used to analyze the distribution of abundances in individual operational taxonomic units (OTUs) within three soil samples. After data filtering, they were grouped into OTU clusters and 329 OTUs were identified from the three soil samples. Among the 329, 160 OTUs were common in the three soil samples. The bacterial diversity is estimated using alpha diversity indices and Shanon index and was found to be 4.490, 4.073 and 4.631 in aged soil, sludge soil and leakage soil, respectively and similarly richness was found to be 618, 417 and 418. The heat map was generated by QIIME software and from the top 50 enriched genera few microbes such as Pseudomonas, Bacillus, Mycobacterium, Sphingomonas and Paracoccus, were shown across all the samples. In addition, we also analyzed various physicochemical properties of soil including pH, temperature, salinity, electrical conductivity, alkalinity, total carbon, total organic matter, nitrogen, phosphorus and potassium to calculate the soil quality index (SQI). The SQI of aged, sludge and leakage soil samples were 0.73, 0.64, and 0.89, respectively. These findings show the presence of unexplored bacterial species which could be applied for hydrocarbon remediation and further they can be exploited for the same.

Bio-functionalized copper oxide/chitosan nanocomposite using Sida cordifolia and their efficient properties of antibacterial, anticancer activity against on breast and lung cancer cell lines.

Nanoparticles synthesis from green chemistry method is gaining a lot of attention due to their non-toxic, low cost and facile. In this study, a copper oxide nanoparticle (CuO NPs) was synthesized using Sida cordifolia aqueous leaf extract and incorporated chitosan biomolecules to potential enhancing of biological properties. The CuO NPs and chitosan (CS) embedded nanocomposite was noted as CuO-CS nanocomposite, its was physicochemical characterized by using of UV-Visible spectroscopy (UV-Vis), Fourier transform infrared spectroscopy (FT-IR), X-ray Diffraction (XRD) and Field emission scanning electron microscopy (FE-SEM) with Energy dispersive X-ray (EDX) analysis. Bio-functionalized CuO-CS nanocomposite was performed antibacterial efficiency against both Gram positive (Staphylococcus aureus, Bacillus subtilis) and Gram negative (Salmonella typhi, Escherichia coli) bacteria through the Mueller Hinton agar (MHA) well diffusion techniques. The highest bactericidal activity was revealed Gram positive of B. subtilis and Gram negative of S. typhi bacteria, respectively. Further, the cytotoxicity effect of biosynthesized nanocomposite was an examined against human breast cancer MDA-MB-231 and lung cancer A549 cell lines. The half maximal inhibitory concentration is showed at 2 µg/mL for MDA-MB-231and 4 µg/mL was A549 cells. Live/dead cells were detected by fluorescence microscopic observation at the IC50 concentration. In furthermore, bio-functionalized CuO-CS nanocomposite was performed photocatatlytic dye degradation against for industrial dyes of crystal violet (CV) and malachite green (MG). From the results, synergic bio-functionalized CuO-CS nanocomposite was suggested potential suitable for biomedical applications as well as industrial wastewater treatment.

Synthesis of HAp/CS-SA composite for effective removal of highly toxic dyes in aqueous solution.

Textile industry is the major backbone of economy of the developing countries. The major problems associated in the textile factories are release of undesired dye effluents, which is a potential pollution risk for human health as well as the environmental aquatic system. The objective of this study was fabrication of a novel composite to treat textile industry effluents in an ecofriendly manner. In this context, hydroxyapatite (HAp) was derived from the mussel shell biowaste and fabricated with chitosan-sodium alginate through the in-situ method. The prepared HAp/CS-SA composite was physicochemically characterized by using Fourier Transform Infrared Spectroscopy (FTIR), X-ray diffraction (XRD), Field emission scanning electron microscopy with energy dispersive X-ray spectroscopy (FESEM-EDX) and High Resolution-Transmission Electron Microscope (HR-TEM). The photocatalytic activity of the HAp/CS-SA composite was evaluated by using Congo red (CR), Malachite green (MG) and Methylene blue (MB) as model dyes for degradation in aqueous solutions under solar irradiation. The degradation rate was recorded as CR (88%), MG (81%) and MB (93%) respectively within 75 min of irradiation. The degraded end products were subjected to toxicity assessment by evaluating the phytotoxicity on seed germination of Vigna radiata plant in pot study. The degraded end products were also tested for toxic inhibition of E. coli and P. aeruginosa by agar well diffusion method. The prepared HAp/CS-SA composite had an enhanced photocatalytic activity due to the presence of natural biopolymers and their biological properties. HAp/CS-SA composite showed potential dye degradation properties and it could be effective for dye removal from industrial wastewaters.

Impact on degradation of antibiotics from poultry litter using Autothermal Thermophilic Aerobic Digestion (ATAD).

Tetracycline (TC) is one of the common antibiotics which is widely used in livestock growth promotion. The prevalent application TC may pave way to progression of antibiotic resistant bacteria. The main objective of this study is to determine the effect of Autothermal Thermophilic Aerobic Digestion (ATAD) on the fate of TC residues found in digested poultry litter. For the determination of TC in poultry litter, thin layer chromatography (TLC) and high performance liquid chromatography (HPLC) were done. TLC result revealed that the Rf value of standard TC on TLC plate was 0.97 which correlates with the Rf value of TC at 0, 12, 24 and 36 h of digested poultry litter sample and not at 48, 60 and 72 h. HPLC chromatogram revealed that the limits of detection and the recovery were 5 µg/kg and 96% for standard TC. Linear correlation curves were obtained over the series of 100-500 µg/mL with correlation coefficient of 0.996 and the calibration curve was Y = 0.001X + 0.066. These results confirmed the degradation of TC in ATAD digestion of poultry litter by abiotic processes.

Assessment of foliar dust deposition and elemental concentrations in foliar dust and long rows of grand tamarind leaves along two major roads of Coimbatore, India.

In this study, the concentration of foliar dust and 23 elemental concentrations in foliar dust and foliar tissues were studied using long rows of grand tamarind trees grown in two major roads in Coimbatore, India. Twenty-four sampling sites were chosen and categorized as urban (n = 5), suburban (n = 14), and rural (n = 5) areas based on the local population. In the case of foliar dust concentration, a significant difference was noted between the sites of urban (range between 3.06 and 6.68 µ/cm2) and suburban areas (range between 0.56 and 5.75 µ/cm2) but not for rural areas (range between 0.40 and 0.47 µ/cm2). When comparing the urban, suburban, and rural, either significantly or insignificantly, 17 elements (Al, Ba, Bi, Ca, Cd, Co, Cu, Fe, Ga, In, K, Mg, Mn, Ni, Sr, and Zn) in urban and five elements (Ag, B, Cr, Na, and Pb) in suburban were higher. However, in the case of elements in tamarind laves, almost all elements except Na and K were higher in the urban area. Furthermore, the study results suggest that the elements in both foliage dust and in tamarind leaves are not evenly distributed between the sites of urban, suburban, and rural areas. This uneven distribution might be due to the construction being performed on a stretch of a four-lane highway during sampling, heavy transportation in three small junctions of suburban sites, and a rail over-bridge construction in one suburban site. However, comprehensive studies are needed to confirm this conclusion.

Eco-biocompatibility of chitosan coated biosynthesized copper oxide nanocomposite for enhanced industrial (Azo) dye removal from aqueous solution and antibacterial properties.

In the present study, the biogenic synthesis of an ecofriendly and non-toxic chitosan (CS) coated copper oxide NPs (CS-CuO nanocomposite) using Psidium guajava aqueous leaf extract. The biogenic synthesized CS-CuO nanocomposite was characterized by using UV-vis spectroscopy analysis (UV-Vis), Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD) and Field emission scanning electron microscopy with energy dispersive X-ray spectroscopy (FE-SEM-EDS), Dynamic light scattering (DLS), and Transmission electron microscopy (TEM). The prepared CS-CuO nanocomposite was evaluated for antibacterial activity by agar well diffusion method as well as minimum inhibitory concentrations (MIC) were assessed against both Gram-positive Streptococcus pneumoniae, Staphylococcus epidermidis and Gram-negative Escherichia coli, Proteus mirabilis with good inhibition effects on Gram-negative bacteria than the Gram-positive bacteria. The interaction of the CS-CuO nanocomposite with the bacterial membrane was visually observed by confocal laser scanning microscopy and the live/dead cells were differentiated by treatment with acridine orange and ethidium bromide dyes.

Clinically important microbial diversity and its antibiotic resistance pattern towards various drugs.

BACKGROUND: Increased use of antibiotics in poultry leads to the development of antimicrobial resistance among the commensal bacterium of broiler chickens. OBJECTIVE: In this study, we aimed at studying the effect of periodic administration of therapeutic antibiotics against the bacterial diversity in poultry litters collected from broiler chickens. METHODS: Poultry litters were collected randomly at regular intervals after administration of antibiotics (1st, 12th and 22nd day) to the chicken. Bedding material without litters served as control. Phenotypic observations showed that there is a difference in the bacterial richness isolated at regular intervals. A total of 32 bacteria were isolated from poultry letters and are grouped into ten different genus. Isolated bacterial species were further confirmed by16S rRNA sequencing. RESULTS: Antibiotic susceptibility profile of isolated bacterial species exhibited strong resistance towards 13 selected antibiotics. These results substantiate that administration of antibiotics leads to the alterations in bacterial diversity and development of antimicrobial resistance among the commensal bacteria of poultry litter. CONCLUSION: This high selection pressure of therapeutic antibiotics may lead to species selection and development of antibiotic resistance among bacterial population. Development of such species selection may access the human and other organisms via food chain and can cause severe health defects.

Deposition of absolute and relative airborne metals on eggshells: a field study.

A biomonitoring field study was conducted to test the deposition of airborne metals on chicken eggshell. The goal was to correlate PM2.5 particle concentration in air, absolute (metals in air) and relative (metals in PM2.5 particles) metals, and metal accumulation on eggshell. The PM2.5 sample was collected for 8 h at different air pollution sites as well as an unpolluted site with glass fiber filters via a fine particulate sampler (with and without addition of eggshell). The PM2.5 particle concentration was high at a cement factory site and low at a sugar factory site. The highest absolute total mass of metal (total mass of all metals in air) was found in the traffic site, and the highest relative total mass of metal (total mass of all metals in PM2.5 particles) was found at the tannery factory. The accumulation of Zn and Pb in eggshell was high at the tannery and sugar factory sites, and Fe was high in the other areas. Three common metals including Cd, As, and Pb were found with significant positive correlation between absolute and relative metals with the metals accumulated in eggshell. The results concluded that the eggshells might be useful tools for monitoring the airborne metals.